Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB73071.1 | SKB73086.1 | SAMN05661099_2457 | SAMN05661099_2458 | Protein of unknown function. | Protein of unknown function. | 0.773 |
SKB73071.1 | SKB73100.1 | SAMN05661099_2457 | SAMN05661099_2459 | Protein of unknown function. | TM2 domain-containing protein. | 0.773 |
SKB73071.1 | SKB73113.1 | SAMN05661099_2457 | SAMN05661099_2460 | Protein of unknown function. | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.490 |
SKB73071.1 | SKB73127.1 | SAMN05661099_2457 | SAMN05661099_2461 | Protein of unknown function. | Hypothetical protein. | 0.480 |
SKB73071.1 | mfd | SAMN05661099_2457 | SAMN05661099_2456 | Protein of unknown function. | Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.514 |
SKB73086.1 | SKB73071.1 | SAMN05661099_2458 | SAMN05661099_2457 | Protein of unknown function. | Protein of unknown function. | 0.773 |
SKB73086.1 | SKB73100.1 | SAMN05661099_2458 | SAMN05661099_2459 | Protein of unknown function. | TM2 domain-containing protein. | 0.843 |
SKB73086.1 | SKB73113.1 | SAMN05661099_2458 | SAMN05661099_2460 | Protein of unknown function. | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.648 |
SKB73086.1 | SKB73127.1 | SAMN05661099_2458 | SAMN05661099_2461 | Protein of unknown function. | Hypothetical protein. | 0.659 |
SKB73086.1 | mfd | SAMN05661099_2458 | SAMN05661099_2456 | Protein of unknown function. | Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.654 |
SKB73100.1 | SKB73071.1 | SAMN05661099_2459 | SAMN05661099_2457 | TM2 domain-containing protein. | Protein of unknown function. | 0.773 |
SKB73100.1 | SKB73086.1 | SAMN05661099_2459 | SAMN05661099_2458 | TM2 domain-containing protein. | Protein of unknown function. | 0.843 |
SKB73100.1 | SKB73113.1 | SAMN05661099_2459 | SAMN05661099_2460 | TM2 domain-containing protein. | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.647 |
SKB73100.1 | SKB73127.1 | SAMN05661099_2459 | SAMN05661099_2461 | TM2 domain-containing protein. | Hypothetical protein. | 0.659 |
SKB73100.1 | mfd | SAMN05661099_2459 | SAMN05661099_2456 | TM2 domain-containing protein. | Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.654 |
SKB73113.1 | SKB73071.1 | SAMN05661099_2460 | SAMN05661099_2457 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Protein of unknown function. | 0.490 |
SKB73113.1 | SKB73086.1 | SAMN05661099_2460 | SAMN05661099_2458 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Protein of unknown function. | 0.648 |
SKB73113.1 | SKB73100.1 | SAMN05661099_2460 | SAMN05661099_2459 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | TM2 domain-containing protein. | 0.647 |
SKB73113.1 | SKB73127.1 | SAMN05661099_2460 | SAMN05661099_2461 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Hypothetical protein. | 0.924 |
SKB73113.1 | mfd | SAMN05661099_2460 | SAMN05661099_2456 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.463 |
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