STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB74117.14a-hydroxytetrahydrobiopterin dehydratase. (83 aa)    
Predicted Functional Partners:
SKB27631.1
Phenylalanine-4-hydroxylase.
  
 0.979
SKB74103.1
Predicted DNA-binding protein, MmcQ/YjbR family.
       0.788
SKB74143.1
Zinc carboxypeptidase.
       0.746
SKB74150.1
Membrane associated serine protease, rhomboid family.
       0.746
SKB74093.1
Tripeptide aminopeptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.564
SKB46031.1
Homogentisate 1,2-dioxygenase.
  
  
 0.556
SKB43129.1
methylmalonyl-CoA epimerase.
  
  
 0.490
SKB46054.1
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.490
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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