STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB74411.1Iron complex outermembrane recepter protein. (776 aa)    
Predicted Functional Partners:
SKB35286.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.602
SKB73931.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.598
SKB35277.1
SusD family protein.
  
 
   0.587
SKB32356.1
Susd and RagB outer membrane lipoprotein.
  
 
   0.572
SKB73944.1
Starch-binding associating with outer membrane.
  
 
   0.564
SKB44905.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.559
SKB82626.1
BadF-type ATPase.
  
     0.559
SKB89178.1
Hypothetical protein.
  
     0.558
SKB44898.1
Starch-binding associating with outer membrane.
  
 
   0.540
SKB50270.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.523
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.