STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB74651.1Outer membrane receptor proteins, mostly Fe transport. (815 aa)    
Predicted Functional Partners:
SKB86227.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.633
SKB86911.1
TonB family C-terminal domain-containing protein.
  
   0.537
SKB94278.1
Beta-barrel assembly machine subunit BamD.
  
     0.529
SKB64944.1
Ketosteroid isomerase homolog.
  
     0.526
SKB33729.1
Long-chain fatty acid transport protein.
  
     0.517
SKB67709.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.464
SKB73043.1
TonB family C-terminal domain-containing protein.
  
   0.459
SKB74616.1
Hypothetical protein.
       0.456
SKB74625.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.456
SKB74640.1
Signal transduction histidine kinase.
       0.456
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.