STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB74940.1Outer membrane protein OmpA. (226 aa)    
Predicted Functional Partners:
SKB74947.1
Nucleoside-diphosphate-sugar epimerase.
   
   0.612
SKB35933.1
WD40-like Beta Propeller Repeat.
 
0.584
SKB74931.1
Hypothetical protein.
       0.528
SKB29839.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  0.513
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.508
SKB65126.1
Chemotaxis protein MotB.
  
 
 
0.501
SKB34504.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.496
SKB33283.1
Imidazolonepropionase.
   
  0.478
SKB39026.1
Hypothetical protein.
   
  0.477
SKB41928.1
Peptidase.
   
  0.477
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.