Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB28597.1 | SKB34511.1 | SAMN05661099_0181 | SAMN05661099_0737 | Periplasmic chaperone for outer membrane proteins Skp. | Hypothetical protein. | 0.613 |
SKB28597.1 | SKB66605.1 | SAMN05661099_0181 | SAMN05661099_2151 | Periplasmic chaperone for outer membrane proteins Skp. | Membrane protein YfhO. | 0.639 |
SKB28597.1 | SKB72580.1 | SAMN05661099_0181 | SAMN05661099_2418 | Periplasmic chaperone for outer membrane proteins Skp. | Response regulator receiver domain-containing protein. | 0.744 |
SKB28597.1 | SKB76017.1 | SAMN05661099_0181 | SAMN05661099_2670 | Periplasmic chaperone for outer membrane proteins Skp. | UDP-2,3-diacylglucosamine hydrolase. | 0.625 |
SKB28597.1 | SKB83755.1 | SAMN05661099_0181 | SAMN05661099_3044 | Periplasmic chaperone for outer membrane proteins Skp. | Protein of unknown function. | 0.754 |
SKB28597.1 | SKB94278.1 | SAMN05661099_0181 | SAMN05661099_3607 | Periplasmic chaperone for outer membrane proteins Skp. | Beta-barrel assembly machine subunit BamD. | 0.731 |
SKB28597.1 | lpxC | SAMN05661099_0181 | SAMN05661099_2415 | Periplasmic chaperone for outer membrane proteins Skp. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.537 |
SKB28597.1 | lpxD | SAMN05661099_0181 | SAMN05661099_2416 | Periplasmic chaperone for outer membrane proteins Skp. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.408 |
SKB34511.1 | SKB28597.1 | SAMN05661099_0737 | SAMN05661099_0181 | Hypothetical protein. | Periplasmic chaperone for outer membrane proteins Skp. | 0.613 |
SKB34511.1 | SKB66605.1 | SAMN05661099_0737 | SAMN05661099_2151 | Hypothetical protein. | Membrane protein YfhO. | 0.713 |
SKB34511.1 | SKB72580.1 | SAMN05661099_0737 | SAMN05661099_2418 | Hypothetical protein. | Response regulator receiver domain-containing protein. | 0.503 |
SKB34511.1 | SKB76017.1 | SAMN05661099_0737 | SAMN05661099_2670 | Hypothetical protein. | UDP-2,3-diacylglucosamine hydrolase. | 0.591 |
SKB34511.1 | SKB83755.1 | SAMN05661099_0737 | SAMN05661099_3044 | Hypothetical protein. | Protein of unknown function. | 0.745 |
SKB34511.1 | SKB94278.1 | SAMN05661099_0737 | SAMN05661099_3607 | Hypothetical protein. | Beta-barrel assembly machine subunit BamD. | 0.678 |
SKB34511.1 | lpxC | SAMN05661099_0737 | SAMN05661099_2415 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.593 |
SKB66605.1 | SKB28597.1 | SAMN05661099_2151 | SAMN05661099_0181 | Membrane protein YfhO. | Periplasmic chaperone for outer membrane proteins Skp. | 0.639 |
SKB66605.1 | SKB34511.1 | SAMN05661099_2151 | SAMN05661099_0737 | Membrane protein YfhO. | Hypothetical protein. | 0.713 |
SKB66605.1 | SKB72580.1 | SAMN05661099_2151 | SAMN05661099_2418 | Membrane protein YfhO. | Response regulator receiver domain-containing protein. | 0.620 |
SKB66605.1 | SKB76017.1 | SAMN05661099_2151 | SAMN05661099_2670 | Membrane protein YfhO. | UDP-2,3-diacylglucosamine hydrolase. | 0.578 |
SKB66605.1 | SKB83755.1 | SAMN05661099_2151 | SAMN05661099_3044 | Membrane protein YfhO. | Protein of unknown function. | 0.771 |
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