STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB76287.1Superoxide dismutase, Cu-Zn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (202 aa)    
Predicted Functional Partners:
SKB32201.1
AraC-type DNA-binding protein.
  
 0.992
SKB32134.1
Protein of unknown function.
   
 0.991
SKB32247.1
Copper chaperone.
   
 0.991
SKB74922.1
Copper chaperone CopZ.
   
 0.991
SKB34943.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
 
 0.985
SKB70583.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.979
SKB37614.1
Cytochrome b6-f complex iron-sulfur subunit.
    
 
 0.908
SKB62539.1
Hypothetical protein.
    
 
 0.908
SKB40471.1
AhpC/TSA family protein.
    
 0.889
SKB50135.1
Thiol-disulfide isomerase or thioredoxin.
    
 0.889
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.