STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB76514.1Regulatory protein, Fis family. (409 aa)    
Predicted Functional Partners:
SKB83711.1
Signal transduction histidine kinase.
  
 0.977
SKB89700.1
Signal transduction histidine kinase.
  
 0.928
SKB71403.1
Response regulator receiver domain-containing protein.
 
     0.880
SKB29683.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 
 0.873
SKB39666.1
PAS domain S-box-containing protein.
  
 0.867
SKB43475.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.833
SKB76507.1
Lipopolysaccharide-assembly.
       0.830
SKB79581.1
PAS domain S-box-containing protein.
  
 0.760
SKB76486.1
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.754
SKB49109.1
Signal transduction histidine kinase.
  
 0.749
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.