STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB76675.1Alcohol dehydrogenase. (370 aa)    
Predicted Functional Partners:
SKB42200.1
Uncharacterized zinc-type alcohol dehydrogenase-like protein.
  
 0.982
SKB76727.1
Phosphoenolpyruvate mutase.
  
 0.950
SKB76691.1
Phosphonopyruvate decarboxylase.
 
   
 0.870
SKB38067.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
 
 0.719
SKB37292.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.708
SKB82790.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.708
SKB76657.1
O-methyltransferase.
    
  0.684
SKB70501.1
Starch synthase.
   
    0.674
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.674
SKB79892.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.668
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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