STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB81108.1Outer membrane receptor proteins, mostly Fe transport. (808 aa)    
Predicted Functional Partners:
SKB62860.1
Starch-binding associating with outer membrane.
  
     0.669
SKB62852.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.657
SKB44646.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.653
SKB86227.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.605
SKB81122.1
Uncharacterized conserved protein YbbC, DUF1343 family.
       0.485
SKB43493.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.482
SKB73043.1
TonB family C-terminal domain-containing protein.
  
   0.482
SKB43481.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.465
SKB41721.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.462
SKB86893.1
TonB family C-terminal domain-containing protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.457
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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