STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB82626.1BadF-type ATPase. (285 aa)    
Predicted Functional Partners:
SKB31939.1
N-acetylglucosamine-6-phosphate deacetylase.
    
 0.901
SKB69266.1
N-acetylglucosamine-6-phosphate deacetylase.
    
 0.901
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.828
SKB75911.1
Glucosamine-6-phosphate deaminase.
  
 
 0.823
SKB82645.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
       0.773
SKB79915.1
Cell surface protein SprA.
  
    0.755
SKB28457.1
Probable protein-translocating porin PorT.
  
     0.749
SKB62619.1
Protein of unknown function.
  
     0.741
SKB82655.1
Outer membrane protein TolC.
       0.740
SKB64822.1
Gliding motility-associated protein GldM.
  
     0.739
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.