STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB82777.1DNA-binding transcriptional regulator, MarR family. (143 aa)    
Predicted Functional Partners:
SKB82790.1
3-hydroxyacyl-CoA dehydrogenase.
 
   
 0.806
SKB82801.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.738
SKB62561.1
Hypothetical protein.
  
     0.621
SKB82847.1
Acyl-CoA dehydrogenase.
 
  
  0.620
SKB46226.1
Protein of unknown function.
  
     0.534
SKB82765.1
Hypothetical protein.
       0.507
SKB33861.1
Hypothetical protein.
  
     0.494
SKB45982.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
  
  0.477
SKB65215.1
Cytochrome c oxidase subunit IV.
  
     0.458
SKB74374.1
Thiamine pyrophosphokinase.
  
     0.458
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.