STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB83000.1Beta-carotene 3-hydroxylase. (153 aa)    
Predicted Functional Partners:
SKB34066.1
Phytoene/squalene synthetase.
 
 0.973
SKB34057.1
Phytoene desaturase.
 
   
 0.829
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.774
SKB62243.1
Beta-carotene ketolase (CrtW type).
 
 
 0.691
SKB83049.1
Lycopene cyclase domain-containing protein.
 
     0.623
SKB62355.1
Phytoene desaturase.
 
   
 0.609
SKB43936.1
Hypothetical protein.
   
 0.608
SKB67284.1
Protein of unknown function.
   
 
 0.598
SKB87376.1
Protein of unknown function.
   
 
 0.598
SKB34084.1
Isopentenyl-diphosphate delta-isomerase.
  
  
 0.577
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.