STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB85402.1Calcineurin-like phosphoesterase. (1256 aa)    
Predicted Functional Partners:
SKB85414.1
Uncharacterized protein YjiK.
 
     0.920
SKB94278.1
Beta-barrel assembly machine subunit BamD.
  
 
 0.919
SKB85421.1
Predicted metal-dependent phosphohydrolase, HD superfamily.
 
     0.898
SKB39996.1
HD domain-containing protein.
 
     0.786
SKB27841.1
Hypothetical protein.
   
 
 0.708
SKB30774.1
Hypothetical protein.
   
 
 0.708
SKB85441.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
   
 
 0.708
SKB32954.1
Methyltransferase domain-containing protein.
 
     0.674
SKB33801.1
PAP2 superfamily protein.
 
     0.593
SKB85430.1
Protein of unknown function.
  
     0.592
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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