STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB86256.1NAD(P)H-dependent FMN reductase. (173 aa)    
Predicted Functional Partners:
SKB62694.1
PAS domain S-box-containing protein.
  
 
 0.669
SKB86290.1
Hypothetical protein.
       0.666
SKB86265.1
Chromosome partitioning protein.
       0.649
SKB83606.1
NAD(P)H-dependent FMN reductase.
  
     0.639
SKB86276.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
     
 0.610
SKB48172.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
     
 0.583
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.580
SKB34943.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.579
SKB86316.1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.564
SKB64294.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
 0.537
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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