STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB86621.1Hypothetical protein. (419 aa)    
Predicted Functional Partners:
SKB86636.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.820
SKB37635.1
Hypothetical protein.
 
     0.616
SKB36320.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
    0.587
SKB86651.1
Topoisomerase-4 subunit A.
  
    0.578
SKB64876.1
Protein of unknown function.
  
     0.529
SKB41304.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
  
     0.476
SKB74866.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.471
SKB73610.1
Hypothetical protein.
  
     0.460
SKB40256.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
  
     0.449
SKB30225.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.425
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.