STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB86827.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (233 aa)    
Predicted Functional Partners:
SKB91200.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.780
SKB64924.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.698
SKB86762.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
     0.567
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.540
SKB76411.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.522
SKB86776.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
       0.501
SKB72543.1
ABC-type multidrug transport system, ATPase component.
  
     0.484
SKB28580.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
     0.478
SKB93294.1
Predicted dehydrogenase.
  
 
  0.443
SKB31989.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.436
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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