STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB89413.1TonB-dependent Receptor Plug Domain. (884 aa)    
Predicted Functional Partners:
SKB89423.1
Hypothetical protein.
 
   
0.813
SKB75300.1
TonB family C-terminal domain-containing protein.
 
   0.638
SKB62451.1
Hypothetical protein.
    
 0.580
SKB62956.1
Hypothetical protein.
    
 0.580
SKB81602.1
CarboxypepD_reg-like domain-containing protein.
 
    0.535
SKB65019.1
UbiA prenyltransferase family protein.
  
     0.530
SKB29599.1
CarboxypepD_reg-like domain-containing protein.
 
  
 0.519
SKB31015.1
Hypothetical protein.
  
     0.496
SKB86911.1
TonB family C-terminal domain-containing protein.
 
   0.489
SKB45041.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
  
    0.457
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.