STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB92071.1Histone H1-like protein Hc1. (81 aa)    
Predicted Functional Partners:
SKB62561.1
Hypothetical protein.
  
     0.770
SKB88966.1
Heme exporter protein B.
  
     0.670
SKB42077.1
23S rRNA pseudouridine955/2504/2580 synthase.
  
     0.653
SKB74374.1
Thiamine pyrophosphokinase.
  
     0.625
SKB88934.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.606
SKB33861.1
Hypothetical protein.
  
     0.570
SKB36050.1
TPR repeat-containing protein.
  
     0.529
SKB28632.1
NADH-quinone oxidoreductase subunit I.
  
     0.514
SKB92076.1
Regulatory protein, luxR family.
       0.499
SKB83060.1
Predicted heme/steroid binding protein.
  
     0.478
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.