STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB92153.1Hypothetical protein. (258 aa)    
Predicted Functional Partners:
SKB92105.1
Sugar lactone lactonase YvrE.
     0.870
SKB92166.1
Hypothetical protein.
 
  
 
0.853
SKB92178.1
N-terminal ig-like domain of cellulase.
     0.842
SKB35334.1
Cytochrome c.
 
  
  0.778
SKB92138.1
Trehalose utilisation.
 
    
0.765
SKB92172.1
Predicted acyltransferase.
 
     0.765
SKB92110.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
 
    
0.680
SKB92099.1
Sugar phosphate isomerase/epimerase.
 
     0.629
SKB43685.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
      0.586
SKB89323.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
  
 
0.575
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.