STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB93144.1Capsule assembly protein Wzi. (572 aa)    
Predicted Functional Partners:
SKB93136.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
     0.839
SKB93160.1
Chain length determinant protein.
 
     0.797
SKB93131.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SKB93145.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
     0.709
SKB85441.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.697
SKB62694.1
PAS domain S-box-containing protein.
  
     0.681
SKB73100.1
TM2 domain-containing protein.
  
     0.609
SKB32829.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.549
SKB39920.1
GAF domain-containing protein.
  
     0.545
SKB31204.1
Hypothetical protein.
  
     0.541
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.