STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB93388.1Hexapeptide repeat of succinyl-transferase. (168 aa)    
Predicted Functional Partners:
SKB93516.1
Predicted dehydrogenase.
 
     0.896
SKB93256.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
 
  
  0.892
SKB93380.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  0.845
SKB93286.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
 0.843
SKB93274.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.834
SKB93334.1
N-acetyl sugar amidotransferase.
 
 
   0.819
SKB93294.1
Predicted dehydrogenase.
  
  
 0.804
SKB93246.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
   
  0.802
SKB93840.1
Predicted dehydrogenase.
 
     0.793
SKB93314.1
Asparagine synthase (glutamine-hydrolysing).
       0.775
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.