STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVAG_072060RTP1_C1 domain-containing protein. (1187 aa)    
Predicted Functional Partners:
TVAG_212480
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.687
TVAG_208450
GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
    
 
 0.606
TVAG_249930
Uncharacterized protein.
   
    0.485
TVAG_212250
SHQ1 domain-containing protein.
   
  
 0.455
TVAG_379530
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.447
TVAG_473130
DUF2428 domain-containing protein.
   
    0.433
TVAG_328410
RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.
    
 
 0.417
TVAG_415700
S1 motif domain-containing protein.
      
 0.404
TVAG_366320
Isochorismatase family protein.
      
 0.400
Your Current Organism:
Trichomonas vaginalis
NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis
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