STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVAG_402780Importin-beta N-terminal domain containing protein. (928 aa)    
Predicted Functional Partners:
TVAG_447370
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
    
 
 0.789
TVAG_031040
Importin-beta N-terminal domain containing protein.
      
 0.786
TVAG_185080
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 
 0.752
TVAG_341140
Ras family protein.
    
 
 0.752
TVAG_391780
Arsenical pump membrane protein.
   
 
 0.652
TVAG_268150
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
   
 
 0.652
TVAG_209190
DEAD/DEAH box helicase family protein.
    
   0.607
TVAG_497090
Eukaryotic translation initiation factor, putative.
    
   0.607
TVAG_380910
Eukaryotic translation initiation factor, putative; Belongs to the DEAD box helicase family.
    
   0.607
TVAG_303500
Nup54 domain-containing protein.
    
 
 0.585
Your Current Organism:
Trichomonas vaginalis
NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis
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