STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVAG_434420LIM domain containing protein. (711 aa)    
Predicted Functional Partners:
TVAG_004040
RRM domain-containing protein.
   
 0.918
TVAG_022530
Uncharacterized protein.
    
 0.843
TVAG_508070
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 
 0.752
TVAG_094090
IQ calmodulin-binding motif family protein.
    
 0.737
TVAG_216160
IQ calmodulin-binding motif family protein.
    
 0.737
TVAG_181640
IQ calmodulin-binding motif family protein.
    
 0.737
TVAG_072720
CULLIN_2 domain-containing protein; Belongs to the cullin family.
     
 0.640
TVAG_103780
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
     
 0.635
TVAG_013010
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
     
 0.625
TVAG_239310
Actinin, putative.
   
 
 0.621
Your Current Organism:
Trichomonas vaginalis
NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis
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