TVAG_219850 protein (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TVAG_219850

Surface antigen BspA-like. (296 aa)

Predicted Functional Partners:

TVAG_014040

0.814

TVAG_405990

0.814

TVAG_414000

0.814

TVAG_230810

0.812

TVAG_473940

0.796

TVAG_472580

0.795

TVAG_066830

0.791

TVAG_269070

0.791

TVAG_428560

0.791

TVAG_160790

0.783

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_014040	TVAG_219850	A2DDF8	A2DXU2	Uncharacterized protein.	Surface antigen BspA-like.	0.814
TVAG_014040	TVAG_230810	A2DDF8	A2EE09	Uncharacterized protein.	Uncharacterized protein.	0.999
TVAG_014040	TVAG_405990	A2DDF8	A2DV89	Uncharacterized protein.	Uncharacterized protein.	0.914
TVAG_014040	TVAG_414000	A2DDF8	A2EC72	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.914
TVAG_066830	TVAG_160790	A2DS99	A2E4T4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.992
TVAG_066830	TVAG_219850	A2DS99	A2DXU2	Uncharacterized protein.	Surface antigen BspA-like.	0.791
TVAG_066830	TVAG_269070	A2DS99	A2EG20	Uncharacterized protein.	Sm protein.	0.994
TVAG_066830	TVAG_428560	A2DS99	A2FJ46	Uncharacterized protein.	RRM domain-containing protein.	0.911
TVAG_066830	TVAG_472580	A2DS99	A2FU85	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.993
TVAG_066830	TVAG_473940	A2DS99	A2EQ40	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
TVAG_160790	TVAG_066830	A2E4T4	A2DS99	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.992
TVAG_160790	TVAG_219850	A2E4T4	A2DXU2	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Surface antigen BspA-like.	0.783
TVAG_160790	TVAG_269070	A2E4T4	A2EG20	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Sm protein.	0.999
TVAG_160790	TVAG_428560	A2E4T4	A2FJ46	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	RRM domain-containing protein.	0.985
TVAG_160790	TVAG_472580	A2E4T4	A2FU85	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
TVAG_160790	TVAG_473940	A2E4T4	A2EQ40	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
TVAG_219850	TVAG_014040	A2DXU2	A2DDF8	Surface antigen BspA-like.	Uncharacterized protein.	0.814
TVAG_219850	TVAG_066830	A2DXU2	A2DS99	Surface antigen BspA-like.	Uncharacterized protein.	0.791
TVAG_219850	TVAG_160790	A2DXU2	A2E4T4	Surface antigen BspA-like.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.783
TVAG_219850	TVAG_230810	A2DXU2	A2EE09	Surface antigen BspA-like.	Uncharacterized protein.	0.812