STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVAG_161250RRM domain-containing protein. (162 aa)    
Predicted Functional Partners:
TVAG_050270
Ubiquitin-conjugating enzyme family protein.
   
 0.885
TVAG_160790
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.877
TVAG_473940
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.875
TVAG_345370
Nuclear cap-binding protein subunit 2.
    
 0.875
TVAG_332520
Splicing factor subunit, putative.
   
 0.873
TVAG_286500
DEAD/DEAH box helicase family protein; Belongs to the DEAD box helicase family.
   
 0.872
TVAG_423490
Heterochromatin protein, putative.
   
 0.871
TVAG_182120
U1 zinc finger family protein.
    
 0.867
TVAG_250380
Uncharacterized protein.
    
 0.867
TVAG_430980
RRM domain-containing protein.
  
 
 0.865
Your Current Organism:
Trichomonas vaginalis
NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis
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