TVAG_410010 protein (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TVAG_410010

Uncharacterized protein. (212 aa)

Predicted Functional Partners:

TVAG_335370

0.901

TVAG_103850

0.901

TVAG_472880

0.901

TVAG_566060

0.901

TVAG_196350

0.873

TVAG_247000

0.863

TVAG_301220

0.863

TVAG_064150

0.863

TVAG_443580

0.863

TVAG_145360

0.863

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_064150	TVAG_103850	A2EIX2	A2FJW4	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	Adaptin N terminal region family protein.	0.856
TVAG_064150	TVAG_335370	A2EIX2	A2FC64	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	Nonclathrin coat protein gamma-like protein, putative.	0.856
TVAG_064150	TVAG_410010	A2EIX2	A2E8H1	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.863
TVAG_064150	TVAG_472880	A2EIX2	A2GDM6	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.856
TVAG_064150	TVAG_566060	A2EIX2	A2GI41	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.856
TVAG_103850	TVAG_064150	A2FJW4	A2EIX2	Adaptin N terminal region family protein.	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	0.856
TVAG_103850	TVAG_145360	A2FJW4	A2EUL8	Adaptin N terminal region family protein.	ADP-ribosylation factor 1, putative; Belongs to the small GTPase superfamily. Arf family.	0.856
TVAG_103850	TVAG_196350	A2FJW4	A2F4W7	Adaptin N terminal region family protein.	B-box zinc finger family protein.	0.859
TVAG_103850	TVAG_247000	A2FJW4	A2DKN8	Adaptin N terminal region family protein.	ADP-ribosylation factor, putative.	0.856
TVAG_103850	TVAG_301220	A2FJW4	A2E5E4	Adaptin N terminal region family protein.	ADP-ribosylation factor, putative; Belongs to the small GTPase superfamily. Arf family.	0.856
TVAG_103850	TVAG_335370	A2FJW4	A2FC64	Adaptin N terminal region family protein.	Nonclathrin coat protein gamma-like protein, putative.	0.631
TVAG_103850	TVAG_410010	A2FJW4	A2E8H1	Adaptin N terminal region family protein.	Uncharacterized protein.	0.901
TVAG_103850	TVAG_443580	A2FJW4	A2ETY2	Adaptin N terminal region family protein.	ADP-ribosylation factor family protein.	0.856
TVAG_103850	TVAG_472880	A2FJW4	A2GDM6	Adaptin N terminal region family protein.	Uncharacterized protein.	0.540
TVAG_103850	TVAG_566060	A2FJW4	A2GI41	Adaptin N terminal region family protein.	Uncharacterized protein.	0.540
TVAG_145360	TVAG_103850	A2EUL8	A2FJW4	ADP-ribosylation factor 1, putative; Belongs to the small GTPase superfamily. Arf family.	Adaptin N terminal region family protein.	0.856
TVAG_145360	TVAG_335370	A2EUL8	A2FC64	ADP-ribosylation factor 1, putative; Belongs to the small GTPase superfamily. Arf family.	Nonclathrin coat protein gamma-like protein, putative.	0.856
TVAG_145360	TVAG_410010	A2EUL8	A2E8H1	ADP-ribosylation factor 1, putative; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.863
TVAG_145360	TVAG_472880	A2EUL8	A2GDM6	ADP-ribosylation factor 1, putative; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.856
TVAG_145360	TVAG_566060	A2EUL8	A2GI41	ADP-ribosylation factor 1, putative; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.856