TVAG_040450 protein (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TVAG_040450

ER lumen protein retaining receptor, putative. (215 aa)

Predicted Functional Partners:

TVAG_366270

0.862

TVAG_150910

0.862

TVAG_121700

0.859

TVAG_432570

0.838

TVAG_214630

0.814

TVAG_260660

0.814

TVAG_476020

0.798

TVAG_183110

0.782

TVAG_256450

0.782

TVAG_329300

0.773

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_040450	TVAG_121700	A2F1U0	A2E981	ER lumen protein retaining receptor, putative.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.859
TVAG_040450	TVAG_150910	A2F1U0	A2FM03	ER lumen protein retaining receptor, putative.	Adaptin_N domain-containing protein.	0.862
TVAG_040450	TVAG_183110	A2F1U0	A2D949	ER lumen protein retaining receptor, putative.	ARF GAP-like zinc finger-containing protein.	0.782
TVAG_040450	TVAG_214630	A2F1U0	A2DK67	ER lumen protein retaining receptor, putative.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.814
TVAG_040450	TVAG_256450	A2F1U0	A2FHA7	ER lumen protein retaining receptor, putative.	ARF GAP-like zinc finger-containing protein.	0.782
TVAG_040450	TVAG_260660	A2F1U0	A2EXI9	ER lumen protein retaining receptor, putative.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.814
TVAG_040450	TVAG_329300	A2F1U0	A2EB98	ER lumen protein retaining receptor, putative.	Coatomer epsilon subunit family protein.	0.773
TVAG_040450	TVAG_366270	A2F1U0	A2DHS1	ER lumen protein retaining receptor, putative.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.862
TVAG_040450	TVAG_432570	A2F1U0	A2DIP8	ER lumen protein retaining receptor, putative.	SNARE protein, putative.	0.838
TVAG_040450	TVAG_476020	A2F1U0	A2DA25	ER lumen protein retaining receptor, putative.	ATPase, AAA family protein.	0.798
TVAG_121700	TVAG_040450	A2E981	A2F1U0	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	ER lumen protein retaining receptor, putative.	0.859
TVAG_121700	TVAG_150910	A2E981	A2FM03	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Adaptin_N domain-containing protein.	0.994
TVAG_121700	TVAG_183110	A2E981	A2D949	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	ARF GAP-like zinc finger-containing protein.	0.628
TVAG_121700	TVAG_214630	A2E981	A2DK67	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.995
TVAG_121700	TVAG_256450	A2E981	A2FHA7	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	ARF GAP-like zinc finger-containing protein.	0.628
TVAG_121700	TVAG_260660	A2E981	A2EXI9	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.995
TVAG_121700	TVAG_329300	A2E981	A2EB98	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer epsilon subunit family protein.	0.999
TVAG_121700	TVAG_366270	A2E981	A2DHS1	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.994
TVAG_121700	TVAG_432570	A2E981	A2DIP8	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	SNARE protein, putative.	0.944
TVAG_121700	TVAG_476020	A2E981	A2DA25	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	ATPase, AAA family protein.	0.939