STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVAG_521400DNA_pol_B_2 domain-containing protein. (439 aa)    
Predicted Functional Partners:
TVAG_426440
Type III restriction enzyme, res subunit family protein.
    
 0.826
TVAG_325770
Type III restriction enzyme, res subunit family protein.
    
 0.826
TVAG_287330
Type III restriction enzyme, res subunit family protein.
    
 0.826
TVAG_473940
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.824
TVAG_496910
Protein kinase, putative.
   
 0.819
TVAG_477730
Helicase conserved C-terminal domain containing protein.
   
 0.818
TVAG_160790
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.814
TVAG_038580
DNA polymerase.
   
 0.809
TVAG_281750
DNA polymerase.
   
 0.809
TVAG_472580
Small nuclear ribonucleoprotein Sm D2.
    
 0.808
Your Current Organism:
Trichomonas vaginalis
NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis
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