Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HDEF_0126 | HDEF_0133 | HDEF_0126 | HDEF_0133 | Hypothetical protein. | Hypothetical protein. | 0.768 |
HDEF_0126 | ssaI | HDEF_0126 | HDEF_0135 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.768 |
HDEF_0126 | ssaJ | HDEF_0126 | HDEF_0134 | Hypothetical protein. | Needle complex inner membrane lipoprotein; COG4669. | 0.768 |
HDEF_0126 | ssaK | HDEF_0126 | HDEF_0132 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.768 |
HDEF_0126 | ssaL | HDEF_0126 | HDEF_0131 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.768 |
HDEF_0126 | ssaM | HDEF_0126 | HDEF_0130 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.773 |
HDEF_0126 | ssaN | HDEF_0126 | HDEF_0128 | Hypothetical protein. | Type III secretion system ATPase; COG1157. | 0.773 |
HDEF_0126 | ssaO | HDEF_0126 | HDEF_0127 | Hypothetical protein. | Putative type III secretion system apparatus protein; Weak similarity and syntenic to ssaO from SPI-2. | 0.773 |
HDEF_0126 | ssaV | HDEF_0126 | HDEF_0129 | Hypothetical protein. | Type III secretion system apparatus protein; COG4789. | 0.773 |
HDEF_0133 | HDEF_0126 | HDEF_0133 | HDEF_0126 | Hypothetical protein. | Hypothetical protein. | 0.768 |
HDEF_0133 | ssaD | HDEF_0133 | HDEF_0146 | Hypothetical protein. | Type III secretion apparatus protein. | 0.469 |
HDEF_0133 | ssaI | HDEF_0133 | HDEF_0135 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.773 |
HDEF_0133 | ssaJ | HDEF_0133 | HDEF_0134 | Hypothetical protein. | Needle complex inner membrane lipoprotein; COG4669. | 0.828 |
HDEF_0133 | ssaK | HDEF_0133 | HDEF_0132 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.800 |
HDEF_0133 | ssaL | HDEF_0133 | HDEF_0131 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.909 |
HDEF_0133 | ssaM | HDEF_0133 | HDEF_0130 | Hypothetical protein. | Type III secretion system apparatus protein. | 0.780 |
HDEF_0133 | ssaN | HDEF_0133 | HDEF_0128 | Hypothetical protein. | Type III secretion system ATPase; COG1157. | 0.781 |
HDEF_0133 | ssaO | HDEF_0133 | HDEF_0127 | Hypothetical protein. | Putative type III secretion system apparatus protein; Weak similarity and syntenic to ssaO from SPI-2. | 0.768 |
HDEF_0133 | ssaV | HDEF_0133 | HDEF_0129 | Hypothetical protein. | Type III secretion system apparatus protein; COG4789. | 0.801 |
ssaD | HDEF_0133 | HDEF_0146 | HDEF_0133 | Type III secretion apparatus protein. | Hypothetical protein. | 0.469 |
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