STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDEF_0194Glycerol-3-phosphate cytidylyltransferase; COG0615. (157 aa)    
Predicted Functional Partners:
gpsA
Fusion of serine acetyltransferase; COG1045,COG0240; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
  0.961
HDEF_0197
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
  
 0.959
plsB
Glycerolphosphate acyltransferase; COG2937; Belongs to the GPAT/DAPAT family.
     
  0.900
HDEF_0196
Glycosyltransferase group 1.
  
  
 0.801
HDEF_0193
Hypothetical protein.
       0.773
HDEF_0195
Hypothetical protein.
       0.773
HDEF_0198
Putative LicD family protein; C terminal truncation; COG3475.
       0.652
HDEF_0202
Putative thiamine pyrophosphate enzyme.
  
  
 0.597
ribE
Riboflavin synthase, alpha chain; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.
  
  
 0.441
Your Current Organism:
Hamiltonella defensa
NCBI taxonomy Id: 572265
Other names: C. Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa str. 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa strain 5AT (Acyrthosiphon pisum)
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