Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HDEF_1504 | invA | HDEF_1504 | HDEF_1499 | Hypothetical protein. | Type III needle complex export protein; COG4789. | 0.701 |
HDEF_1504 | invB | HDEF_1504 | HDEF_1500 | Hypothetical protein. | Type III secretion chaperone. | 0.773 |
HDEF_1504 | invC | HDEF_1504 | HDEF_1501 | Hypothetical protein. | Type III ATP synthase; COG1157. | 0.773 |
HDEF_1504 | invE | HDEF_1504 | HDEF_1498 | Hypothetical protein. | Type III invasion protein. | 0.656 |
HDEF_1504 | invF | HDEF_1504 | HDEF_1496 | Hypothetical protein. | Type III invasion regulatory protein. | 0.611 |
HDEF_1504 | invG | HDEF_1504 | HDEF_1497 | Hypothetical protein. | Type III outer membrane secretin precursor; COG1450. | 0.656 |
HDEF_1504 | spaM | HDEF_1504 | HDEF_1502 | Hypothetical protein. | Type III needle complex assembly protein. | 0.773 |
HDEF_1504 | spaN | HDEF_1504 | HDEF_1503 | Hypothetical protein. | Putative type III surface presentation of antigens protein; Weakly similar and syntenic to spaN of SPI-1. | 0.773 |
HDEF_1504 | spaO | HDEF_1504 | HDEF_1505 | Hypothetical protein. | Type III surface presentation of antigens protein. | 0.456 |
HDEF_1504 | spaP | HDEF_1504 | HDEF_1506 | Hypothetical protein. | Type III surface presentation of antigens protein; COG4790. | 0.445 |
invA | HDEF_1504 | HDEF_1499 | HDEF_1504 | Type III needle complex export protein; COG4789. | Hypothetical protein. | 0.701 |
invA | invB | HDEF_1499 | HDEF_1500 | Type III needle complex export protein; COG4789. | Type III secretion chaperone. | 0.743 |
invA | invC | HDEF_1499 | HDEF_1501 | Type III needle complex export protein; COG4789. | Type III ATP synthase; COG1157. | 0.981 |
invA | invE | HDEF_1499 | HDEF_1498 | Type III needle complex export protein; COG4789. | Type III invasion protein. | 0.805 |
invA | invF | HDEF_1499 | HDEF_1496 | Type III needle complex export protein; COG4789. | Type III invasion regulatory protein. | 0.696 |
invA | invG | HDEF_1499 | HDEF_1497 | Type III needle complex export protein; COG4789. | Type III outer membrane secretin precursor; COG1450. | 0.900 |
invA | spaM | HDEF_1499 | HDEF_1502 | Type III needle complex export protein; COG4789. | Type III needle complex assembly protein. | 0.761 |
invA | spaN | HDEF_1499 | HDEF_1503 | Type III needle complex export protein; COG4789. | Putative type III surface presentation of antigens protein; Weakly similar and syntenic to spaN of SPI-1. | 0.701 |
invA | spaO | HDEF_1499 | HDEF_1505 | Type III needle complex export protein; COG4789. | Type III surface presentation of antigens protein. | 0.761 |
invA | spaP | HDEF_1499 | HDEF_1506 | Type III needle complex export protein; COG4789. | Type III surface presentation of antigens protein; COG4790. | 0.963 |
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