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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDEF_1981Phage-related exonuclease. (168 aa)    
Predicted Functional Partners:
HDEF_1978
Hypothetical protein.
       0.723
HDEF_1979
Conserved hypothetical phage protein.
       0.723
HDEF_1980
Conserved hypothetical phage protein.
       0.723
HDEF_2209
Phage virion morphogenesis protein.
   
    0.722
HDEF_1144
Putative resolvase; C terminal truncation; COG1961.
  
    0.531
HDEF_1983
ISHde2, transposase orfA.
       0.453
HDEF_0740
Putative resolvase; COG1961.
   
    0.451
HDEF_0931
Putative resolvase; C terminal truncation; COG1961.
   
    0.451
HDEF_0932
Putative resolvase; N and C terminal truncations; COG1961.
   
    0.451
HDEF_1047
Inversion of adjacent DNA; COG1961.
   
    0.451
Your Current Organism:
Hamiltonella defensa
NCBI taxonomy Id: 572265
Other names: C. Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa str. 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa strain 5AT (Acyrthosiphon pisum)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.