STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDEF_2004Conserved hypothetical phage protein; N terminal truncation. (271 aa)    
Predicted Functional Partners:
HDEF_2006
Phage DNA-directed DNA polymerase; N and C terminal truncations.
 
     0.899
P44
APSE-2 prophage; conserved hypothetical protein.
 
     0.781
P50
APSE-2 prophage; conserved hypothetical.
 
     0.781
P41
APSE-2 prophage; COG0553.
 
     0.776
P45
APSE-2 prophage; DNA polymerase.
 
     0.776
HDEF_1694
Phage DNA helicase, partial; N terminal truncation; COG0553.
 
     0.776
P3
APSE-2 prophage; predicted P-loop ATPase.
 
     0.737
HDEF_1441
Phage portal protein; COG4695.
  
     0.648
HDEF_1445
Phage terminase, large subunit.
  
     0.595
HDEF_1112
Phage HNH endonuclease.
  
     0.527
Your Current Organism:
Hamiltonella defensa
NCBI taxonomy Id: 572265
Other names: C. Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa str. 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa strain 5AT (Acyrthosiphon pisum)
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