STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmH50S ribosomal subunit protein L34; COG0230; Belongs to the bacterial ribosomal protein bL34 family. (46 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal subunit protein L28; COG0227; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.993
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.989
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.989
rpmF
50S ribosomal subunit protein L32; COG0333; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.988
rpsU
30S ribosomal subunit protein S21; COG0828; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.988
rpsP
30S ribosomal subunit protein S16; COG0228; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.988
rpsN
30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.986
rpmG
50S ribosomal subunit protein L33; COG0267; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.986
rpmJ
50S ribosomal subunit protein L36; COG0257; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.985
rpsO
30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.984
Your Current Organism:
Hamiltonella defensa
NCBI taxonomy Id: 572265
Other names: C. Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa str. 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa strain 5AT (Acyrthosiphon pisum)
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