STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC61036.1TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: tgr:Tgr7_1516 polyhydroxyalkonate synthesis repressor, PhaR. (153 aa)    
Predicted Functional Partners:
phaC
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; Polymerizes D(-)-3-hydroxybutyryl-CoA to create polyhydroxybutyrate (PHB) which consists of thousands of hydroxybutyrate molecules linked end to end. This subunit has catalytic activity that is enhanced 100-fold by PhaE, the non-catalytic subunit.
 
   
 0.896
phaB
TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tgr:Tgr7_1519 acetoacetyl-CoA reductase.
 
   
 0.856
phaE
poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; Polymerizes D(-)-3-hydroxybutyryl-CoA to create polyhydroxybutyrate (PHB) which consists of thousands of hydroxybutyrate molecules linked end to end. This subunit has no catalytic activity but enhances the activity of PhaC, the catalytic subunit, 100-fold. Belongs to the PHA/PHB synthase family. Type III PhaE subfamily.
 
   
 0.851
ADC61037.1
KEGG: mgm:Mmc1_1168 phasin family protein.
     
 0.840
ADC61039.1
PFAM: protein of unknown function DUF34; KEGG: pag:PLES_48241 hypothetical protein.
     
 0.730
phaA
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: mgm:Mmc1_1165 acetyl-CoA acetyltransferase.
 
   
 0.700
ADC62571.1
KEGG: csa:Csal_2465 hypothetical protein.
 
     0.573
ADC64014.1
PFAM: Sporulation domain protein; KEGG: sde:Sde_2696 carbamoyl-phosphate synthase, small subunit.
  
     0.443
Your Current Organism:
Allochromatium vinosum
NCBI taxonomy Id: 572477
Other names: A. vinosum DSM 180, Allochromatium vinosum DSM 180, Allochromatium vinosum str. DSM 180, Allochromatium vinosum strain DSM 180
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