STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC61157.1PFAM: protein of unknown function DUF423; KEGG: bcl:ABC3922 hypothetical protein. (130 aa)    
Predicted Functional Partners:
ADC61158.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.721
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: tgr:Tgr7_0325 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.516
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: tau:Tola_0181 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.503
Your Current Organism:
Allochromatium vinosum
NCBI taxonomy Id: 572477
Other names: A. vinosum DSM 180, Allochromatium vinosum DSM 180, Allochromatium vinosum str. DSM 180, Allochromatium vinosum strain DSM 180
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.