STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC63232.1Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (363 aa)    
Predicted Functional Partners:
ADC63308.1
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bav:BAV1578 C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component.
 
  
 0.835
ADC63309.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mag:amb2582 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.821
ADC63231.1
PFAM: sodium/hydrogen exchanger; KEGG: scl:sce1496 Na+/H+ antiporter.
       0.668
ADC63230.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: hna:Hneap_1461 putative transcriptional regulator, Crp/Fnr family.
       0.506
ADC62000.1
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: saz:Sama_2211 C4-dicarboxylate transport protein.
  
   
 0.447
Your Current Organism:
Allochromatium vinosum
NCBI taxonomy Id: 572477
Other names: A. vinosum DSM 180, Allochromatium vinosum DSM 180, Allochromatium vinosum str. DSM 180, Allochromatium vinosum strain DSM 180
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