STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC63725.1TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; GH3 auxin-responsive promoter; KEGG: ttu:TERTU_4395 GH3 auxin-responsive promoter family protein; Belongs to the RimK family. (851 aa)    
Predicted Functional Partners:
ADC61421.1
PFAM: protein of unknown function DUF785; KEGG: pca:Pcar_2309 hypothetical protein.
     0.756
ADC63724.1
PFAM: major facilitator superfamily MFS_1; KEGG: cyn:Cyan7425_0968 major facilitator superfamily MFS_1.
       0.655
ADC61179.1
KEGG: bmj:BMULJ_00621 hypothetical protein.
  
     0.572
ADC63726.1
PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_1996 radical SAM family protein.
       0.466
ADC62728.1
KEGG: net:Neut_2246 hypothetical protein.
  
     0.405
Your Current Organism:
Allochromatium vinosum
NCBI taxonomy Id: 572477
Other names: A. vinosum DSM 180, Allochromatium vinosum DSM 180, Allochromatium vinosum str. DSM 180, Allochromatium vinosum strain DSM 180
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