STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_0446KEGG: tne:Tneu_0229 PaREP1 family protein; SPTR: B1YAV4 PaREP1 family protein. (42 aa)    
Predicted Functional Partners:
Vdis_0447
ATPase; InterPro IPR011579; KEGG: cma:Cmaq_1422 hypothetical protein; PFAM: ATPase; SPTR: A8M928 Putative uncharacterized protein; PFAM: Archaeal ATPase.
       0.741
Vdis_0445
KEGG: cma:Cmaq_1218 peptidase A5, thermopsin; SPTR: A8ME39 Peptidase A5, thermopsin; PFAM: Thermopsin.
       0.563
Vdis_0444
InterPro IPR002797; KEGG: cma:Cmaq_1463 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: A8M968 Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein.
       0.406
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.