STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_0499COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: sto:ST1114 aminotransferase; PFAM: aminotransferase class-III; SPTR: Q972L8 441aa long hypothetical aminotransferase; PFAM: Aminotransferase class-III. (443 aa)    
Predicted Functional Partners:
Vdis_1136
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016162:IPR015590:IPR016161; KEGG: pai:PAE2480 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Q8ZV31 Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family.
 
 0.948
Vdis_0031
COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: cma:Cmaq_1271 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: A8ME92 Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase.
  
 
 0.920
Vdis_2377
COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814:IPR015421:IPR015424; KEGG: kcr:Kcr_0880 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; SPTR: B1L597 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 
0.915
Vdis_1316
COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814:IPR015424:IPR015421; KEGG: cma:Cmaq_0687 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; SPTR: A8MCM1 Aminotransferase class-III; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 
0.912
Vdis_0593
Protein of unknown function DUF137; COGs: COG1701 conserved hypothetical protein; InterPro IPR002855; KEGG: cma:Cmaq_1781 hypothetical protein; PFAM: Protein of unknown function DUF137; SPTR: A8MAX5 Putative uncharacterized protein; PFAM: Protein of unknown function DUF137.
     
  0.900
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
     
 0.559
Vdis_0817
FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: cma:Cmaq_1985 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: A8MC17 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, beta subunit family, heterotetrameric form.
 
  
 0.548
Vdis_0301
COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR015424:IPR015421:IPR000192; KEGG: mth:MTH1601 aspartate aminotransferase; PFAM: aminotransferase class V; SPTR: Q59569 Aspartate aminotransferase; PFAM: Aminotransferase class-V.
  
 
 0.525
Vdis_0530
FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: siy:YG5714_2221 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: D0KR81 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase.
 
  
 0.513
Vdis_1797
FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: mkm:Mkms_4985 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Q1B284 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase.
 
  
 0.511
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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