STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_0500Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR018181:IPR013216; KEGG: pai:PAE3217 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q8ZTJ8 Putative uncharacterized protein; PFAM: Methyltransferase domain. (286 aa)    
Predicted Functional Partners:
Vdis_1269
COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006137:IPR001268:IPR006138; KEGG: cma:Cmaq_0427 NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: A8MBS9 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit.
  
 0.999
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.747
rps24e
COGs: COG2004 Ribosomal protein S24E; InterPro IPR018098:IPR001976:IPR012677; KEGG: cma:Cmaq_0004 ribosomal protein S24E-like protein; PFAM: Ribosomal protein S24e; SPTR: A8M9H7 Ribosomal protein S24E-like protein; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
  0.656
rps6e
COGs: COG2125 Ribosomal protein S6E (S10); InterPro IPR001377:IPR018282; KEGG: pcl:Pcal_0821 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: A3MUD0 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.629
rps3ae
COGs: COG1890 Ribosomal protein S3AE; InterPro IPR001593:IPR018281; KEGG: cma:Cmaq_1755 30S ribosomal protein S3Ae; PFAM: ribosomal protein S3Ae; SPTR: A8MAK1 Ribosomal protein S3Ae; PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family.
   
  0.628
rps4e
COGs: COG1471 Ribosomal protein S4E; InterPro IPR002942:IPR013843:IPR013845:IPR000876; KEGG: cma:Cmaq_1832 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; SMART: RNA-binding S4 domain protein; SPTR: A8MB20 30S ribosomal protein S4e; PFAM: S4 domain; Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.621
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
  0.613
rps15
COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR012606:IPR000589:IPR009068; KEGG: pcl:Pcal_1173 30S ribosomal protein S15P; PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; SPTR: A3MVD1 30S ribosomal protein S15P/S13e; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15.
  
  0.606
rps17
Ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.599
rps8
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
  0.587
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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