STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_0646COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950:IPR017228; KEGG: cma:Cmaq_0760 translation initiation factor SUI1; PFAM: translation initiation factor SUI1; SPTR: A8MCU0 Translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic; Belongs to the SUI1 family. (117 aa)    
Predicted Functional Partners:
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
 0.979
eif1a
Translation initiation factor eIF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
 
 
 0.976
rps17e
COGs: COG1383 Ribosomal protein S17E; InterPro IPR001210; KEGG: pis:Pisl_1095 30S ribosomal protein S17e; PFAM: Ribosomal protein S17e; SPTR: A1RTI5 30S ribosomal protein S17e; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family.
 
   0.975
rps17
Ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
 0.974
rps10
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.965
rps6e
COGs: COG2125 Ribosomal protein S6E (S10); InterPro IPR001377:IPR018282; KEGG: pcl:Pcal_0821 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: A3MUD0 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
 0.965
rps24e
COGs: COG2004 Ribosomal protein S24E; InterPro IPR018098:IPR001976:IPR012677; KEGG: cma:Cmaq_0004 ribosomal protein S24E-like protein; PFAM: Ribosomal protein S24e; SPTR: A8M9H7 Ribosomal protein S24E-like protein; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
   
   0.962
rps4e
COGs: COG1471 Ribosomal protein S4E; InterPro IPR002942:IPR013843:IPR013845:IPR000876; KEGG: cma:Cmaq_1832 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; SMART: RNA-binding S4 domain protein; SPTR: A8MB20 30S ribosomal protein S4e; PFAM: S4 domain; Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family.
  
 
 0.956
rps28e
COGs: COG2053 Ribosomal protein S28E/S33; InterPro IPR000289:IPR012340:IPR016027; KEGG: cma:Cmaq_1847 30S ribosomal protein S28e; PFAM: Ribosomal protein S28e; SPTR: A8MB35 Ribosomal protein S28e; PFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
 
 
 0.955
rps15
COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR012606:IPR000589:IPR009068; KEGG: pcl:Pcal_1173 30S ribosomal protein S15P; PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; SPTR: A3MVD1 30S ribosomal protein S15P/S13e; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15.
   
 
 0.954
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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