STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps5Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (203 aa)    
Predicted Functional Partners:
rpl10e
COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR018255:IPR016180:IPR001197; KEGG: cma:Cmaq_0968 50S ribosomal protein L10e; PFAM: Ribosomal protein L10e/L16; SPTR: A8MDE4 50S ribosomal protein L10e; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; Belongs to the universal ribosomal protein uL16 family.
 
 
 0.999
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
 
 
 0.999
rpl1
Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.
 
 
 0.999
rpl11
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.999
Vdis_0077
COGs: COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain; InterProIPR018935:IPR011009:IPR000687:IPR015285:IPR 018934; KEGG: cma:Cmaq_1049 protein of unknown function RIO1; PFAM: RIO-like kinase; RIO2 kinase, winged helix domain protein; SMART: protein of unknown function RIO1; SPTR: A8MDM2 Putative uncharacterized protein; PFAM: RIO1 family; Rio2, N-terminal.
 
 
 0.999
rps9
COGs: COG0103 Ribosomal protein S9; InterProIPR020574:IPR020568:IPR019958:IPR014721:IPR 000754; KEGG: cma:Cmaq_1571 30S ribosomal protein S9P; PFAM: ribosomal protein S9; SPTR: A8M9S3 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
 
 0.999
rpl13
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.999
rpl18e
COGs: COG1727 Ribosomal protein L18E; InterPro IPR001196; KEGG: pis:Pisl_0696 50S ribosomal protein L18e; PFAM: ribosomal protein L15; SPTR: A1RSE2 50S ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.999
rpoD
RNA polymerase insert; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
 
 
 0.999
rpl5
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
 
 
 0.999
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.