STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_1420Rhomboid family protein; InterPro IPR002610; KEGG: cma:Cmaq_0937 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: A8MDB3 Rhomboid family protein; PFAM: Rhomboid family. (196 aa)    
Predicted Functional Partners:
Vdis_1421
KEGG: sso:SSO2552 hypothetical protein; SPTR: Q97VR1 Putative uncharacterized protein; PFAM: Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A.
       0.590
Vdis_1419
Radical SAM domain protein; COGs: COG2108 conserved hypothetical protein related to pyruvate formate-lyase activation; InterPro IPR000385:IPR006638:IPR007197; KEGG: pis:Pisl_0768 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A1RSL2 Radical SAM domain protein; PFAM: Radical SAM superfamily.
       0.566
Vdis_1422
Hypothetical protein; KEGG: Auxin Efflux Carrier family protein; SPTR: Q5C346 SJCHGC03643 protein (Fragment).
       0.403
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.