STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_1976Cellulase; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: cma:Cmaq_0206 cellulase; PFAM: peptidase M42 family protein; PRIAM: Cellulase; SPTR: A8MAL9 Cellulase; PFAM: M42 glutamyl aminopeptidase. (350 aa)    
Predicted Functional Partners:
Vdis_1975
Protein of unknown function UPF0179; COGs: COG1860 conserved hypothetical protein; InterPro IPR005369; KEGG: pas:Pars_2336 hypothetical protein; PFAM: Protein of unknown function UPF0179; SPTR: A4WNB3 UPF0179 protein Pars_2336; PFAM: Uncharacterised protein family (UPF0179).
       0.773
pgk
COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR015824:IPR001576:IPR015911; KEGG: pcl:Pcal_0633 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: A3MTU2 Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.657
gap
Glyceraldehyde-3-phosphate dehydrogenase, type II; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR006436:IPR020831:IPR016040:IPR020828:IPR 020829:IPR020830; KEGG: pcl:Pcal_0632 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (NAD(P)(+)) (phosphorylating); SPTR: A3MTU1 Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, t [...]
       0.646
Vdis_1979
KH domain protein; COGs: COG1094 RNA-binding protein (contains KH domains); InterPro IPR019964:IPR004087:IPR018111; KEGG: cma:Cmaq_0980 putative RNA-processing protein; PFAM: K Homology, type 1, subgroup; SPTR: A8MDF6 KH type 1 domain protein; TIGRFAM: KH domain protein; PFAM: KH domain; TIGRFAM: arCOG04150 universal archaeal KH domain protein.
       0.446
Vdis_1479
Glycosyl transferase group 1; COGs: COG0058 Glucan phosphorylase; InterPro IPR001296; KEGG: tpe:Tpen_1778 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A1S143 Glycosyl transferase, group 1; PFAM: Carbohydrate phosphorylase.
  
  
 0.403
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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