STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_2012InterPro IPR011991:IPR001845:IPR013199; KEGG: cma:Cmaq_1345 FaeA family protein; PFAM: Helix-turn-helix Mga DNA-binding trans-acting positive regulator; SMART: regulatory protein ArsR; SPTR: A8M8V2 FaeA family protein; PFAM: RNA polymerase III subunit RPC82 helix-turn-helix domain. (97 aa)    
Predicted Functional Partners:
Vdis_2011
COGs: COG3425 3-hydroxy-3-methylglutaryl CoA synthase; InterProIPR004656:IPR016038:IPR013528:IPR013747:IPR 016039; KEGG: cma:Cmaq_1240 hypothetical protein; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; Hydroxymethylglutaryl-coenzyme A synthase domain; SPTR: A8ME61 UPF0219 protein Cmaq_1240; TIGRFAM: hydroxymethylglutaryl-CoA synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; Thiolase, N-terminal domain; TIGRFAM: hydroxymethylglutaryl-CoA synthase, putative; Belongs to the thiolase-like superfamily. UPF0219 family.
       0.633
Vdis_2010
Hypothetical protein; KEGG: sul:SYO3AOP1_0704 ATPase, P-type (transporting), HAD superfamily, subfamily IC; SPTR: B2V8R7 ATPase, P-type (Transporting), HAD superfamily, subfamily IC.
       0.528
ribK
CTP-dependent riboflavin kinase; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
       0.456
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.