STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vdis_2041COGs: COG1632 Ribosomal protein L15E; InterPro IPR000439:IPR012678; KEGG: cma:Cmaq_1892 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: A8MBH6 Ribosomal protein L15e; PFAM: Ribosomal L15. (187 aa)    
Predicted Functional Partners:
rpl22
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
 
 0.989
rpl18
Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
 
 0.988
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 0.986
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
 
 0.985
rps3ae
COGs: COG1890 Ribosomal protein S3AE; InterPro IPR001593:IPR018281; KEGG: cma:Cmaq_1755 30S ribosomal protein S3Ae; PFAM: ribosomal protein S3Ae; SPTR: A8MAK1 Ribosomal protein S3Ae; PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family.
 
 
 0.984
rpl32e
COGs: COG1717 Ribosomal protein L32E; InterPro IPR001515; KEGG: pcl:Pcal_0175 50S ribosomal protein L32e; PFAM: Ribosomal protein L32e; SPTR: A3MSJ5 LSU ribosomal protein L32E; PFAM: Ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family.
 
 0.984
rpl30
COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR016082:IPR005997; KEGG: pas:Pars_0314 50S ribosomal protein L30P; PFAM: ribosomal protein L30; SPTR: A4WHQ9 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30P; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal.
 
 0.983
rpl30e
COGs: COG1911 Ribosomal protein L30E; InterPro IPR004038; KEGG: cma:Cmaq_0320 ribosomal protein L7Ae/L30e/S12e/Gadd45; PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; SPTR: A8MB78 50S ribosomal protein L30e; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 0.983
rps4e
COGs: COG1471 Ribosomal protein S4E; InterPro IPR002942:IPR013843:IPR013845:IPR000876; KEGG: cma:Cmaq_1832 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; SMART: RNA-binding S4 domain protein; SPTR: A8MB20 30S ribosomal protein S4e; PFAM: S4 domain; Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family.
 
 
 0.983
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 0.982
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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