STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO77205.1Integrase catalytic region; COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: hor:Hore_00290 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; PFAM: Integrase core domain. (277 aa)    
Predicted Functional Partners:
ADO77204.1
InterPro IPR002514; KEGG: hor:Hore_13730 transposase IS3/IS911 family protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase.
  
  
 0.672
ADO77203.1
Filamentation induced by cAMP protein Fic; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: afl:Aflv_2660 Fic (filamentation induced by cAMP) family protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family.
     
 0.513
ADO77311.1
Integrase catalytic region; COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: gtn:GTNG_3490 IS1477 transposase; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; manually curated; PFAM: Integrase core domain.
 
  
0.503
ADO77307.1
InterPro IPR003346; KEGG: btl:BALH_1957 transposase; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
 
  
 0.431
ADO77185.1
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: hor:Hore_11450 resolvase domain protein; PFAM: Resolvase domain; SPTR: Resolvase domain protein; PFAM: Resolvase, N terminal domain.
     
 0.417
Your Current Organism:
Halanaerobium praevalens
NCBI taxonomy Id: 572479
Other names: H. praevalens DSM 2228, Halanaerobium praevalens ATCC 33744, Halanaerobium praevalens DSM 2228, Halanaerobium praevalens GSL, Halanaerobium praevalens str. DSM 2228, Halanaerobium praevalens strain DSM 2228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.